chr11:2572089:G>A Detail (hg38) (KCNQ1)

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Summary
Information
Links
Disease area statistics
MGeND
ClinVar
CIViC
DisGeNET
Annotation
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Information

Genome

Assembly	Position
hg19	chr11:2,593,319-2,593,319 View the variant detail on this assembly version.
hg38	chr11:2,572,089-2,572,089

HGVS

KCNQ1

Type	Transcript	Protein
RefSeq	NM_000218.2:c.760G>A	NP_000209.2:p.Val254Met
	NM_181798.1:c.379G>A	NP_861463.1:p.Val127Met
Ensemble	ENST00000155840.12:c.760G>A	ENST00000155840.12:p.Val254Met
	ENST00000335475.6:c.379G>A	ENST00000335475.6:p.Val127Met
	ENST00000496887.7:c.499G>A	ENST00000496887.7:p.Val167Met
	ENST00000646564.2:c.478-11346G>A
	ENST00000713725.1:c.760G>A	ENST00000713725.1:p.Val254Met

Summary

MGeND

Clinical significance	Likely pathogenic Pathogenic
Variant entry	8
GWAS entry
Disease area statistics	Show details

Frequency

[No Data.]

Prediction

ClinVar

Clinical Significance	Pathogenic
Review star
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Links

KCNQ1

Type	Database	ID	Link
Gene	MIM	607542	OMIM
	HGNC	6294	HGNC
	Ensembl	ENSG00000053918	Ensembl
	NCBI		NCBI
	Gene Cards		Gene Cards
	OncoKB		OncoKB

Type	Database	ID	Link
Variant	TogoVar
	COSMIC	COSM5999423	COSMIC
	MONDO

Disease area statistics

MGeND

Clinical significance	Last evaluated	Condition	Origin	Submission ID	Submitter	Institute	Citation	Comment	Image
Pathogenic		long qt syndrome	germline	MGS000001 (TMGS000137)	Kenjiro Kosaki	Keio University
Pathogenic		long qt syndrome	germline	MGS000001 (TMGS000137)	Kenjiro Kosaki	Keio University
Pathogenic		long qt syndrome	germline	MGS000001 (TMGS000154)	Kenjiro Kosaki	Keio University
Likely pathogenic		long qt syndrome	germline	MGS000001 (TMGS000174)	Kenjiro Kosaki	Keio University
Pathogenic		long qt syndrome	germline	MGS000001 (TMGS000174)	Kenjiro Kosaki	Keio University
Pathogenic		long qt syndrome	germline	MGS000001 (TMGS000178)	Kenjiro Kosaki	Keio University

ClinVar

Clinical significance	Last evaluated	Review status	Condition	Origin	Links
Pathogenic	1996-01-01	no assertion criteria provided	long QT syndrome 1	germline	Detail
Pathogenic	2004-03-01	no assertion criteria provided	long QT syndrome 1	germline	Detail
not provided		no assertion provided	Congenital long QT syndrome	germline	Detail
Pathogenic	2023-08-28	criteria provided, multiple submitters, no conflicts	not provided	germline	Detail
Pathogenic	2024-01-09	criteria provided, single submitter	long QT syndrome	germline	Detail
Pathogenic	2018-12-31	criteria provided, single submitter		germline	Detail

CIViC

[No Data.]

DisGeNET

Score	Disease name	Description	Source	Pubmed	Links
0.417	long QT syndrome	NA	CLINVAR		Detail
0.417	long QT syndrome	The second mutation, V254M in KCNQ1, co-segregated with higher QT intervals and ...	BeFree	12820704	Detail
0.133	Congenital long QT syndrome	NA	CLINVAR		Detail
0.573	Romano-Ward Syndrome	NA	CLINVAR		Detail

Annotation

Annotations

Descrption	Source	Links
NM_000218.3(KCNQ1):c.760G>A (p.Val254Met) AND Long QT syndrome 1	ClinVar	Detail
NM_000218.2(KCNQ1):c.[1249G>A;760G>A] AND Long QT syndrome 1	ClinVar	Detail
NM_000218.3(KCNQ1):c.760G>A (p.Val254Met) AND Congenital long QT syndrome	ClinVar	Detail
NM_000218.3(KCNQ1):c.760G>A (p.Val254Met) AND not provided	ClinVar	Detail
NM_000218.3(KCNQ1):c.760G>A (p.Val254Met) AND Long QT syndrome	ClinVar	Detail
NM_000218.3(KCNQ1):c.760G>A (p.Val254Met) AND Cardiovascular phenotype	ClinVar	Detail
NA	DisGeNET	Detail
The second mutation, V254M in KCNQ1, co-segregated with higher QT intervals and symptoms in other fa...	DisGeNET	Detail
NA	DisGeNET	Detail
NA	DisGeNET	Detail

Overlapped Transcript Coordinates

Gene	Transcript ID	Exon Number	Chromosome	Start	Stop	Type	Amino Mutation	Transcript Position	Links

Overlapped Transcript

Gene	Transcript ID	Chromosome	Start	Stop	Links

Gene: -
dbSNP: rs120074179 dbSNP
Genome: hg38
Position: chr11:2,572,089-2,572,089
Variant Type: snv
Reference Allele: G
Alternative Allele: A

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